Tedna: a transposable element de novo  assembler | Zendy

Matthias Zytnicki | Zendy; Eduard Akhunov | Zendy; Hadi Quesneville | Zendy

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Tedna: a transposable element de novo assembler

Author(s) -

Matthias Zytnicki,

Eduard Akhunov,

Hadi Quesneville

Publication year - 2014

Publication title -

bioinformatics

Language(s) - Portuguese

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btu365

Subject(s) - transposable element , genome , biology , sequence assembly , computational biology , computer science , genetics , gene , gene expression , transcriptome

Recent technological advances are allowing many laboratories to sequence their research organisms. Available de novo assemblers leave repetitive portions of the genome poorly assembled. Some genomes contain high proportions of transposable elements, and transposable elements appear to be a major force behind diversity and adaptation. Few de novo assemblers for transposable elements exist, and most have either been designed for small genomes or 454 reads.

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