Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series | Zendy

María José Nueda | Zendy; Sonia Tarazona | Zendy; Ana Conesa | Zendy

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Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series

Author(s) -

María José Nueda,

Sonia Tarazona,

Ana Conesa

Publication year - 2014

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btu333

Subject(s) - bioconductor , computer science , r package , data mining , count data , mit license , rna seq , measure (data warehouse) , software , statistics , mathematics , programming language , gene , gene expression , biology , biochemistry , transcriptome , poisson distribution

The widespread adoption of RNA-seq to quantitatively measure gene expression has increased the scope of sequencing experimental designs to include time-course experiments. maSigPro is an R package specifically suited for the analysis of time-course gene expression data, which was developed originally for microarrays and hence was limited in its application to count data.

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