Large scale analysis of signal reachability
Author(s) -
Andrei Todor,
Haitham Gabr,
Alin Dobra,
Tamer Kahveci
Publication year - 2014
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btu262
Subject(s) - reachability , computer science , scale (ratio) , signal (programming language) , algorithm , programming language , geography , cartography
Major disorders, such as leukemia, have been shown to alter the transcription of genes. Understanding how gene regulation is affected by such aberrations is of utmost importance. One promising strategy toward this objective is to compute whether signals can reach to the transcription factors through the transcription regulatory network (TRN). Due to the uncertainty of the regulatory interactions, this is a #P-complete problem and thus solving it for very large TRNs remains to be a challenge.
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