Trimmomatic: a flexible trimmer for Illumina sequence data | Zendy

Anthony Bolger | Zendy; Marc Lohse | Zendy; Björn Usadel | Zendy

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Trimmomatic: a flexible trimmer for Illumina sequence data

Author(s) -

Anthony Bolger,

Marc Lohse,

Björn Usadel

Publication year - 2014

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btu170

Subject(s) - preprocessor , computer science , flexibility (engineering) , java , data mining , data pre processing , sequence (biology) , operating system , programming language , biology , statistics , genetics , mathematics

Although many next-generation sequencing (NGS) read preprocessing tools already existed, we could not find any tool or combination of tools that met our requirements in terms of flexibility, correct handling of paired-end data and high performance. We have developed Trimmomatic as a more flexible and efficient preprocessing tool, which could correctly handle paired-end data.

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