Bio Simulators: a web UI for biological simulation | Zendy

Michael Pedersen | Zendy; Nicolas Oury | Zendy; Colin Gravill | Zendy; Andrew Phillips | Zendy

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Bio Simulators: a web UI for biological simulation

Author(s) -

Michael Pedersen,

Nicolas Oury,

Colin Gravill,

Andrew Phillips

Publication year - 2014

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btu050

Subject(s) - computer science , plug in , cloud computing , web application , software deployment , process (computing) , world wide web , host (biology) , software engineering , operating system , human–computer interaction , ecology , biology

A host of formal, textual languages for modeling cellular processes have recently emerged, but their simulation tools often require an installation process which can pose a barrier for use. Bio Simulators is a framework for easy online deployment of simulators, providing a uniform web-based user interface to a diverse pool of tools. The framework is demonstrated through two plugins based on the KaSim Kappa simulator, one running directly in the browser and another running in the cloud.

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