MAGIC: access portal to a cross-platform gene expression compendium for maize | Zendy

Qiang Fu | Zendy; Ana Carolina Fierro | Zendy; Pieter Meysman | Zendy; Aminael SánchezRodríguez | Zendy; Klaas Vandepoele | Zendy; Kathleen Marchal | Zendy; Kristof Engelen | Zendy

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MAGIC: access portal to a cross-platform gene expression compendium for maize

Author(s) -

Qiang Fu,

Ana Carolina Fierro,

Pieter Meysman,

Aminael SánchezRodríguez,

Klaas Vandepoele,

Kathleen Marchal,

Kristof Engelen

Publication year - 2014

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btt739

Subject(s) - compendium , annotation , magic (telescope) , zea mays , computer science , gene , biology , computational biology , world wide web , genetics , geography , agronomy , physics , archaeology , quantum mechanics

To facilitate the exploration of publicly available Zea mays expression data, we constructed a maize expression compendium, making use of an integration methodology and a consistent probe to gene mapping based on the 5b.60 sequence release of Z. mays. The compendium is made available through a web portal MAGIC that hosts a variety of analysis tools to easily browse and analyze the data. Our compendium is different from previous initiatives in combining expression values across different experiments by providing a consistent gene annotation across different platforms.

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