AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations | Zendy

Hue Vuong | Zendy; Robert M. Stephens | Zendy; Natalia Volfovsky | Zendy

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AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations

Author(s) -

Hue Vuong,

Robert M. Stephens,

Natalia Volfovsky

Publication year - 2013

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btt655

Subject(s) - annotation , visualization , genome browser , genome , computer science , context (archaeology) , computational biology , interactive visualization , web server , genomics , biology , the internet , world wide web , data mining , genetics , artificial intelligence , gene , paleontology

The plethora of information that emerges from large-scale genome characterization studies has triggered the development of computational frameworks and tools for efficient analysis, interpretation and visualization of genomic data. Functional annotation of genomic variations and the ability to visualize the data in the context of whole genome and/or multiple genomes has remained a challenging task. We have developed an interactive web-based tool, AVIA (Annotation, Visualization and Impact Analysis), to explore and interpret large sets of genomic variations (single nucleotide variations and insertion/deletions) and to help guide and summarize genomic experiments. The annotation, summary plots and tables are packaged and can be downloaded by the user from the email link provided.

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