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Bayesian network prior: network analysis of biological data using external knowledge
Author(s) -
Senol Isci,
Haluk Dogan,
Cengizhan Öztürk,
Hasan H. Otu
Publication year - 2013
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btt643
Subject(s) - computer science , bayesian network , bayesian probability , data mining , biological network , machine learning , task (project management) , relation (database) , network analysis , artificial intelligence , process (computing) , bioinformatics , biology , physics , management , quantum mechanics , economics , operating system
Reverse engineering GI networks from experimental data is a challenging task due to the complex nature of the networks and the noise inherent in the data. One way to overcome these hurdles would be incorporating the vast amounts of external biological knowledge when building interaction networks. We propose a framework where GI networks are learned from experimental data using Bayesian networks (BNs) and the incorporation of external knowledge is also done via a BN that we call Bayesian Network Prior (BNP). BNP depicts the relation between various evidence types that contribute to the event 'gene interaction' and is used to calculate the probability of a candidate graph (G) in the structure learning process.

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