Open AccessPattern search in BioPAX models
Author(s) -
Özgün Babur,
Bülent Arman Aksoy,
Igor Rodchenkov,
S. Onur Sumer,
Chris Sander,
Emek Demir
Publication year - 2013
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btt539
Subject(s) - computer science , java , source code , documentation , software , license , data mining , programming language , operating system
BioPAX is a standard language for representing complex cellular processes, including metabolic networks, signal transduction and gene regulation. Owing to the inherent complexity of a BioPAX model, searching for a specific type of subnetwork can be non-trivial and difficult.
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