catRAPID omics: a web server for large-scale prediction of protein–RNA interactions | Zendy

Federico Agostini | Zendy; Andreas Zanzoni | Zendy; Petr Klus | Zendy; Doménica Marchese | Zendy; Davide Cirillo | Zendy; Gian Gaetano Tartaglia | Zendy

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catRAPID omics: a web server for large-scale prediction of protein–RNA interactions

Author(s) -

Federico Agostini,

Andreas Zanzoni,

Petr Klus,

Doménica Marchese,

Davide Cirillo,

Gian Gaetano Tartaglia

Publication year - 2013

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btt495

Subject(s) - biology , xist , computational biology , rna , caenorhabditis elegans , rna binding protein , genetics , gene , x inactivation , x chromosome

Here we introduce catRAPID omics, a server for large-scale calculations of protein-RNA interactions. Our web server allows (i) predictions at proteomic and transcriptomic level; (ii) use of protein and RNA sequences without size restriction; (iii) analysis of nucleic acid binding regions in proteins; and (iv) detection of RNA motifs involved in protein recognition.

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