targetHub: a programmable interface for miRNA–gene interactions | Zendy

Ganiraju C. Manyam | Zendy; Cristina Ivan | Zendy; George A. Călin | Zendy; Kevin R. Coombes | Zendy

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targetHub: a programmable interface for miRNA–gene interactions

Author(s) -

Ganiraju C. Manyam,

Cristina Ivan,

George A. Călin,

Kevin R. Coombes

Publication year - 2013

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btt439

Subject(s) - interface (matter) , throughput , computer science , microrna , computational biology , programmer , gene , biology , genetics , embedded system , operating system , wireless , bubble , maximum bubble pressure method

With the expansion of high-throughput technologies, understanding different kinds of genome-level data is a common task. MicroRNA (miRNA) is increasingly profiled using high-throughput technologies (microarrays or next-generation sequencing). The downstream analysis of miRNA targets can be difficult. Although there are many databases and algorithms to predict miRNA targets, there are few tools to integrate miRNA-gene interaction data into high-throughput genomic analyses.

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