Pipit: visualizing functional impacts of structural variations | Zendy

Ryo Sakai | Zendy; Matthieu Moisse | Zendy; Joke Reumers | Zendy; Jan Aerts | Zendy

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Pipit: visualizing functional impacts of structural variations

Author(s) -

Ryo Sakai,

Matthieu Moisse,

Joke Reumers,

Jan Aerts

Publication year - 2013

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btt367

Subject(s) - computer science , visualization , artificial intelligence

Pipit is a gene-centric interactive visualization tool designed to study structural genomic variations. Through focusing on individual genes as the functional unit, researchers are able to study and generate hypotheses on the biological impact of different structural variations, for instance, the deletion of dosage-sensitive genes or the formation of fusion genes. Pipit is a cross-platform Java application that visualizes structural variation data from Genome Variation Format files.

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