iFUSE: integrated fusion gene explorer | Zendy

Saskia Hiltemann | Zendy; Elizabeth McClellan | Zendy; Jos van Nijnatten | Zendy; Sebastiaan Horsman | Zendy; Ivo Palli | Zendy; Inês Teles Alves | Zendy; Thomas A. Hartjes | Zendy; Jan Trapman | Zendy; Peter J. van der Spek | Zendy; Guido Jenster | Zendy; Andrew Stubbs | Zendy

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iFUSE: integrated fusion gene explorer

Author(s) -

Saskia Hiltemann,

Elizabeth McClellan,

Jos van Nijnatten,

Sebastiaan Horsman,

Ivo Palli,

Inês Teles Alves,

Thomas A. Hartjes,

Jan Trapman,

Peter J. van der Spek,

Guido Jenster,

Andrew Stubbs

Publication year - 2013

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btt252

Subject(s) - annotation , gene annotation , fusion gene , genomics , computational biology , genome , visualization , file format , gene , computer science , biology , dna sequencing , functional genomics , genome browser , genetics , data mining , database

We present iFUSE (integrated fusion gene explorer), an online visualization tool that provides a fast and informative view of structural variation data and prioritizes those breaks likely representing fusion genes. This application uses calculated break points to determine fusion genes based on the latest annotation for genomic sequence information, and where relevant the structural variation (SV) events are annotated with predicted RNA and protein sequences. iFUSE takes as input a Complete Genomics (CG) junction file, a FusionMap fusion detection report file or a file already analysed and annotated by the iFUSE application on a previous occasion.

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