PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways | Zendy

Jake Y. Fried | Zendy; Martijn van Iersel | Zendy; Mirit I. Aladjem | Zendy; Kurt W. Kohn | Zendy; Augustin Luna | Zendy

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PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways

Author(s) -

Jake Y. Fried,

Martijn van Iersel,

Mirit I. Aladjem,

Kurt W. Kohn,

Augustin Luna

Publication year - 2013

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btt146

Subject(s) - computer science , information retrieval

The PathVisio-Faceted Search plugin helps users explore and understand complex pathways by overlaying experimental data and data from webservices, such as Ensembl BioMart, onto diagrams drawn using formalized notations in PathVisio. The plugin then provides a filtering mechanism, known as a faceted search, to find and highlight diagram nodes (e.g. genes and proteins) of interest based on imported data. The tool additionally provides a flexible scripting mechanism to handle complex queries.

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