BRANCH: boosting RNA-Seq assemblies with partial or related genomic sequences | Zendy

Ergude Bao | Zendy; Tao Jiang | Zendy; Thomas Girke | Zendy

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BRANCH: boosting RNA-Seq assemblies with partial or related genomic sequences

Author(s) -

Ergude Bao,

Tao Jiang,

Thomas Girke

Publication year - 2013

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btt127

Subject(s) - contig , de novo transcriptome assembly , computational biology , sequence assembly , biology , genome , transcriptome , rna seq , genomics , genetics , computer science , gene , gene expression

De novo transcriptome assemblies of RNA-Seq data are important for genomics applications of unsequenced organisms. Owing to the complexity and often incomplete representation of transcripts in sequencing libraries, the assembly of high-quality transcriptomes can be challenging. However, with the rapidly growing number of sequenced genomes, it is now feasible to improve RNA-Seq assemblies by guiding them with genomic sequences.

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