HExpoChem: a systems biology resource to explore human exposure to chemicals
Author(s) -
Olivier Taboureau,
Ulrik Plesner Jacobsen,
Christian Gram Kalhauge,
Daniel Edsgärd,
Olga Rigina,
Ramneek Gupta,
Karine Audouze
Publication year - 2013
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btt112
Subject(s) - human health , hazardous waste , chemical biology , adverse outcome pathway , computational biology , systems biology , human proteins , biology , computer science , environmental health , ecology , genetics , medicine , gene
Humans are exposed to diverse hazardous chemicals daily. Although an exposure to these chemicals is suspected to have adverse effects on human health, mechanistic insights into how they interact with the human body are still limited. Therefore, acquisition of curated data and development of computational biology approaches are needed to assess the health risks of chemical exposure. Here we present HExpoChem, a tool based on environmental chemicals and their bioactivities on human proteins with the objective of aiding the qualitative exploration of human exposure to chemicals. The chemical-protein interactions have been enriched with a quality-scored human protein-protein interaction network, a protein-protein association network and a chemical-chemical interaction network, thus allowing the study of environmental chemicals through formation of protein complexes and phenotypic outcomes enrichment.
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