Searching for virus phylotypes | Zendy

François Chevenet | Zendy; Matthieu Jung | Zendy; Martine Peeters | Zendy; Túlio de Oliveira | Zendy; Olivier Gascuel | Zendy

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Searching for virus phylotypes

Author(s) -

François Chevenet,

Matthieu Jung,

Martine Peeters,

Túlio de Oliveira,

Olivier Gascuel

Publication year - 2013

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btt010

Subject(s) - phylotype , virus , computer science , biology , virology , computational biology , genetics , gene , phylogenetics

Large phylogenies are being built today to study virus evolution, trace the origin of epidemics, establish the mode of transmission and survey the appearance of drug resistance. However, no tool is available to quickly inspect these phylogenies and combine them with extrinsic traits (e.g. geographic location, risk group, presence of a given resistance mutation), seeking to extract strain groups of specific interest or requiring surveillance.

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