TMBB-DB: a transmembrane β-barrel proteome database | Zendy

Thomas C. Freeman | Zendy; William C. Wimley | Zendy

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TMBB-DB: a transmembrane β-barrel proteome database

Author(s) -

Thomas C. Freeman,

William C. Wimley

Publication year - 2012

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bts478

Subject(s) - genome , transmembrane protein , proteome , membrane protein , computational biology , biology , bacterial outer membrane , bacterial genome size , barrel (horology) , identification (biology) , sequence alignment , genetics , peptide sequence , gene , membrane , escherichia coli , receptor , materials science , botany , composite material

We previously reported the development of a highly accurate statistical algorithm for identifying β-barrel outer membrane proteins or transmembrane β-barrels (TMBBs), from genomic sequence data of Gram-negative bacteria (Freeman,T.C. and Wimley,W.C. (2010) Bioinformatics, 26, 1965-1974). We have now applied this identification algorithm to all available Gram-negative bacterial genomes (over 600 chromosomes) and have constructed a publicly available, searchable, up-to-date, database of all proteins in these genomes.

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