MyMiner: a web application for computer-assisted biocuration and text annotation | Zendy

David Salgado | Zendy; Martin Krallinger | Zendy; Marc Depaule | Zendy; Élodie Drula | Zendy; Ashish V. Tendulkar | Zendy; Florian Leitner | Zendy; Alfonso Valencia | Zendy; Christophe Marcelle | Zendy

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MyMiner: a web application for computer-assisted biocuration and text annotation

Author(s) -

David Salgado,

Martin Krallinger,

Marc Depaule,

Élodie Drula,

Ashish V. Tendulkar,

Florian Leitner,

Alfonso Valencia,

Christophe Marcelle

Publication year - 2012

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bts435

Subject(s) - annotation , computer science , process (computing) , information retrieval , world wide web , web application , data curation , artificial intelligence , programming language

The exponential growth of scientific literature has resulted in a massive amount of unstructured natural language data that cannot be directly handled by means of bioinformatics tools. Such tools generally require structured data, often generated through a cumbersome process of manual literature curation. Herein, we present MyMiner, a free and user-friendly text annotation tool aimed to assist in carrying out the main biocuration tasks and to provide labelled data for the development of text mining systems. MyMiner allows easy classification and labelling of textual data according to user-specified classes as well as predefined biological entities. The usefulness and efficiency of this application have been tested for a range of real-life annotation scenarios of various research topics.

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