TLM-Tracker: software for cell segmentation, tracking and lineage analysis in time-lapse microscopy movies | Zendy

Johannes Klein | Zendy; Stefan Leupold | Zendy; Ilona Biegler | Zendy; Rebekka Biedendieck | Zendy; Richard Münch | Zendy; Dieter Jahn | Zendy

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TLM-Tracker: software for cell segmentation, tracking and lineage analysis in time-lapse microscopy movies

Author(s) -

Johannes Klein,

Stefan Leupold,

Ilona Biegler,

Rebekka Biedendieck,

Richard Münch,

Dieter Jahn

Publication year - 2012

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bts424

Subject(s) - executable , graphical user interface , software , computer science , segmentation , context (archaeology) , matlab , interface (matter) , tracking (education) , image segmentation , computer vision , artificial intelligence , programming language , biology , operating system , psychology , paleontology , pedagogy , bubble , maximum bubble pressure method

Time-lapse imaging in combination with fluorescence microscopy techniques enable the investigation of gene regulatory circuits and uncovered phenomena like culture heterogeneity. In this context, computational image processing for the analysis of single cell behaviour plays an increasing role in systems biology and mathematical modelling approaches. Consequently, we developed a software package with graphical user interface for the analysis of single bacterial cell behaviour.

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