Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees | Zendy

Maureen Stolzer | Zendy; Han Lai | Zendy; Minli Xu | Zendy; Deepa Sathaye | Zendy; Benjamin Vernot | Zendy; Dannie Durand | Zendy

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Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees

Author(s) -

Maureen Stolzer,

Han Lai,

Minli Xu,

Deepa Sathaye,

Benjamin Vernot,

Dannie Durand

Publication year - 2012

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bts386

Subject(s) - phylogenetic tree , coalescent theory , lineage (genetic) , tree (set theory) , gene duplication , event (particle physics) , sorting , biology , phylogenetics , phylogenetic network , computer science , horizontal gene transfer , binary number , algorithm , gene , evolutionary biology , mathematics , genetics , combinatorics , physics , arithmetic , quantum mechanics

Gene duplication (D), transfer (T), loss (L) and incomplete lineage sorting (I) are crucial to the evolution of gene families and the emergence of novel functions. The history of these events can be inferred via comparison of gene and species trees, a process called reconciliation, yet current reconciliation algorithms model only a subset of these evolutionary processes.

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