Bendix: intuitive helix geometry analysis and abstraction | Zendy

Anna Caroline E. Dahl | Zendy; Matthieu Chavent | Zendy; Mark S.P. Sansom | Zendy

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Bendix: intuitive helix geometry analysis and abstraction

Author(s) -

Anna Caroline E. Dahl,

Matthieu Chavent,

Mark S.P. Sansom

Publication year - 2012

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bts357

Subject(s) - graphics , flexibility (engineering) , visualization , abstraction , helix (gastropod) , software , documentation , computer science , computer graphics (images) , geometry , source code , engineering drawing , programming language , function (biology) , mathematics , engineering , artificial intelligence , geology , biology , paleontology , philosophy , statistics , epistemology , evolutionary biology , snail

The flexibility of α-helices is important for membrane protein function and calls for better visualization and analysis. Software is presented that quantifies and projects the helix axis evolution over time, with the choice of uniform or analytic heatmap graphics according to the local geometry. Bendix supports static, molecular dynamics, atomistic and coarse-grained input.

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