NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species | Zendy

Anat Kreimer | Zendy; Adi DoronFaigenboim | Zendy; Elhanan Borenstein | Zendy; Shiri Freilich | Zendy

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NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species

Author(s) -

Anat Kreimer,

Adi DoronFaigenboim,

Elhanan Borenstein,

Shiri Freilich

Publication year - 2012

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bts323

Subject(s) - pairwise comparison , computer science , documentation , software , r package , software package , competition (biology) , data mining , ecology , biology , artificial intelligence , computational science , programming language

NetCmpt is a tool for calculating the competitive potential between pairs of bacterial species. The score describes the effective metabolic overlap (EMO) between two species, derived from analyzing the topology of the corresponding metabolic models. NetCmpt is based on the EMO algorithm, developed and validated in previous studies. It takes as input lists of species-specific enzymatic reactions (EC numbers) and generates a matrix of the potential competition scores between all pairwise combinations.

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