CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows–Wheeler transform | Zendy

Yongchao Liu | Zendy; Bertil Schmidt | Zendy; Douglas L. Maskell | Zendy

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CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows–Wheeler transform

Author(s) -

Yongchao Liu,

Bertil Schmidt,

Douglas L. Maskell

Publication year - 2012

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bts276

Subject(s) - cuda , computer science , parallel computing , graphics , graphics processing unit , general purpose computing on graphics processing units , exploit , speedup , reference genome , genome , computer graphics (images) , biochemistry , computer security , gene , chemistry

New high-throughput sequencing technologies have promoted the production of short reads with dramatically low unit cost. The explosive growth of short read datasets poses a challenge to the mapping of short reads to reference genomes, such as the human genome, in terms of alignment quality and execution speed.

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