DelPhi web server v2: incorporating atomic-style geometrical figures into the computational protocol | Zendy

Nicholas Smith | Zendy; Shawn Witham | Zendy; Subhra Sarkar | Zendy; Jie Zhang | Zendy; Lin Li | Zendy; Chuan Li | Zendy; Emil Alexov | Zendy

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DelPhi web server v2: incorporating atomic-style geometrical figures into the computational protocol

Author(s) -

Nicholas Smith,

Shawn Witham,

Subhra Sarkar,

Jie Zhang,

Lin Li,

Chuan Li,

Emil Alexov

Publication year - 2012

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bts200

Subject(s) - protocol (science) , delphi , computer science , style (visual arts) , database , world wide web , programming language , medicine , geography , archaeology , alternative medicine , pathology

A new edition of the DelPhi web server, DelPhi web server v2, is released to include atomic presentation of geometrical figures. These geometrical objects can be used to model nano-size objects together with real biological macromolecules. The position and size of the object can be manipulated by the user in real time until desired results are achieved. The server fixes structural defects, adds hydrogen atoms and calculates electrostatic energies and the corresponding electrostatic potential and ionic distributions.

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