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CRNreals: a toolbox for distinguishability and identifiability analysis of biochemical reaction networks
Author(s) -
Gábor Szederkényi,
Julio R. Banga,
Antonio A. Alonso
Publication year - 2012
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/bts171
Subject(s) - toolbox , identifiability , computer science , sbml , inference , matlab , software , systems biology , software tool , documentation , theoretical computer science , biological network , programming language , machine learning , artificial intelligence , computational biology , biology , markup language , xml , operating system
Chemical reaction network theory is widely used in modeling and analyzing complex biochemical systems such as metabolic networks and cell signalling pathways. Being able to produce all the biologically and chemically important qualitative dynamical features, chemical reaction networks (CRNs) have attracted significant attention in the systems biology community. It is well-known that the reliable inference of CRN models generally requires thorough identifiability and distinguishability analysis together with carefully selected prior modeling assumptions. Here, we present a software toolbox CRNreals that supports the distinguishability and identifiability analysis of CRN models using recently published optimization-based procedures.

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