Rknots: topological analysis of knotted biopolymers with R | Zendy

Federico Comoglio | Zendy; Maurizio Rinaldi | Zendy

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Rknots: topological analysis of knotted biopolymers with R

Author(s) -

Federico Comoglio,

Maurizio Rinaldi

Publication year - 2012

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bts160

Subject(s) - visualization , preprocessor , simple (philosophy) , computer science , syntax , topology (electrical circuits) , topological data analysis , characterization (materials science) , algorithm , data mining , artificial intelligence , mathematics , nanotechnology , combinatorics , materials science , philosophy , epistemology

Rknots is a flexible R package providing tools for the detection and characterization of topological knots in biological polymers. The package is well documented and provides a simple syntax for data import and preprocessing, structure reduction, topological analyses and 2D and 3D visualization. Remarkably, Rknots is not limited to protein knots and allows researchers from interdisciplinary fields to analyze different topological structures and to develop simple yet fully custom pipelines.

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