CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human | Zendy

Bo Qin | Zendy; Meng Zhou | Zendy; Ying Ge | Zendy; Len Taing | Zendy; Tao Liu | Zendy; Qian Wang | Zendy; Su Wang | Zendy; Junsheng Chen | Zendy; Lingling Shen | Zendy; Xikun Duan | Zendy; Shengen Hu | Zendy; Wei Li | Zendy; Henry W. Long | Zendy; Yong Zhang | Zendy; X. Shirley Liu | Zendy

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CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human

Author(s) -

Bo Qin,

Meng Zhou,

Ying Ge,

Len Taing,

Tao Liu,

Qian Wang,

Su Wang,

Junsheng Chen,

Lingling Shen,

Xikun Duan,

Shengen Hu,

Wei Li,

Henry W. Long,

Yong Zhang,

X. Shirley Liu

Publication year - 2012

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bts157

Subject(s) - annotation , computer science , chromatin , web server , metadata , computational biology , biology , world wide web , database , the internet , gene , genetics , artificial intelligence

Transcription and chromatin regulators, and histone modifications play essential roles in gene expression regulation. We have created CistromeMap as a web server to provide a comprehensive knowledgebase of all of the publicly available ChIP-Seq and DNase-Seq data in mouse and human. We have also manually curated metadata to ensure annotation consistency, and developed a user-friendly display matrix for quick navigation and retrieval of data for specific factors, cells and papers. Finally, we provide users with summary statistics of ChIP-Seq and DNase-Seq studies.

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