IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data | Zendy

Dan Wang | Zendy; Li Yan | Zendy; Qiang Hu | Zendy; Lara E. Sucheston | Zendy; Michael J. Higgins | Zendy; Christine B. Ambrosone | Zendy; Candace S. Johnson | Zendy; Dominic J. Smiraglia | Zendy; Song Liu | Zendy

AI Assistant Blog Pricing

Home ZAIA Blog

Open Access

IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data

Author(s) -

Dan Wang,

Li Yan,

Qiang Hu,

Lara E. Sucheston,

Michael J. Higgins,

Christine B. Ambrosone,

Candace S. Johnson,

Dominic J. Smiraglia,

Song Liu

Publication year - 2012

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bts013

Subject(s) - methylation , dna methylation , illumina methylation assay , computational biology , epigenetics , automatic summarization , cpg site , computer science , pipeline (software) , illumina dye sequencing , biology , genetics , dna sequencing , gene , operating system , gene expression , information retrieval

The Illumina Infinium HumanMethylation450 BeadChip is a newly designed high-density microarray for quantifying the methylation level of over 450 000 CpG sites within human genome. Illumina Methylation Analyzer (IMA) is a computational package designed to automate the pipeline for exploratory analysis and summarization of site-level and region-level methylation changes in epigenetic studies utilizing the 450K DNA methylation microarray. The pipeline loads the data from Illumina platform and provides user-customized functions commonly required to perform exploratory methylation analysis for individual sites as well as annotated regions.

The content you want is available to Zendy users.

Already have an account? Click here to sign in.

Having issues? You can contact us here

Accelerating Research