CHROMATRA: a Galaxy tool for visualizing genome-wide chromatin signatures | Zendy

Thomas Hentrich | Zendy; Julia M. SchulzeHentrich | Zendy; Eldon Emberly | Zendy; Michael S. Kobor | Zendy

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CHROMATRA: a Galaxy tool for visualizing genome-wide chromatin signatures

Author(s) -

Thomas Hentrich,

Julia M. SchulzeHentrich,

Eldon Emberly,

Michael S. Kobor

Publication year - 2012

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/bts007

Subject(s) - workflow , visualization , computer science , genome , computational biology , software , chromatin , genome browser , gene , data mining , biology , genomics , genetics , database , programming language

CHROMATRA (CHROmatin Mapping Across TRAnscripts) is a visualization tool available as plug-in for the Galaxy platform. It allows detailed yet concise presentations of data derived from ChIP-chip or ChIP-seq experiments by visualizing enrichment scores across genes or other genomic features while accounting for their length and additional characteristics such as gene expression. It integrates into typical analysis workflows and enables rapid graphical assessment and comparison of genome-wide data at a glance.

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