NetSeed: a network-based reverse-ecology tool for calculating the metabolic interface of an organism with its environment | Zendy

Rogan Carr | Zendy; Elhanan Borenstein | Zendy

Open Access

NetSeed: a network-based reverse-ecology tool for calculating the metabolic interface of an organism with its environment

Author(s) -

Rogan Carr,

Elhanan Borenstein

Publication year - 2012

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btr721

Subject(s) - perl , documentation , computer science , organism , interface (matter) , set (abstract data type) , software , mac os , open source , r package , world wide web , web application , software engineering , programming language , operating system , biology , paleontology , bubble , maximum bubble pressure method

NetSeed is a web tool and Perl module for analyzing the topology of metabolic networks and calculating the set of exogenously acquired compounds. NetSeed is based on the seed detection algorithm, developed and validated in previous studies.

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