MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation | Zendy

Laurent Gatto | Zendy; Kathryn S. Lilley | Zendy

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MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation

Author(s) -

Laurent Gatto,

Kathryn S. Lilley

Publication year - 2011

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btr645

Subject(s) - bioconductor , computer science , workflow , visualization , isobaric labeling , r package , data mining , isobaric process , software , raw data , database , quantitative proteomics , proteomics , chemistry , computational science , programming language , biochemistry , physics , thermodynamics , gene

MSnbase is an R/Bioconductor package for the analysis of quantitative proteomics experiments that use isobaric tagging. It provides an exploratory data analysis framework for reproducible research, allowing raw data import, quality control, visualization, data processing and quantitation. MSnbase allows direct integration of quantitative proteomics data with additional facilities for statistical analysis provided by the Bioconductor project.

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