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NoRSE: noise reduction and state evaluator for high-frequency single event traces
Author(s) -
Nigel F. Reuel,
Peter Bojo,
Jingqing Zhang,
Ardemis A. Boghossian,
Junho Ahn,
Jong−Ho Kim,
Michael S. Strano
Publication year - 2011
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btr632
Subject(s) - computer science , reduction (mathematics) , noise (video) , flagging , algorithm , event (particle physics) , trace (psycholinguistics) , noise reduction , matlab , state (computer science) , data mining , artificial intelligence , mathematics , programming language , image (mathematics) , linguistics , philosophy , physics , geometry , archaeology , history , quantum mechanics
NoRSE was developed to analyze high-frequency datasets collected from multistate, dynamic experiments, such as molecular adsorption and desorption onto carbon nanotubes. As technology improves sampling frequency, these stochastic datasets become increasingly large with faster dynamic events. More efficient algorithms are needed to accurately locate the unique states in each time trace. NoRSE adapts and optimizes a previously published noise reduction algorithm and uses a custom peak flagging routine to rapidly identify unique event states. The algorithm is explained using experimental data from our lab and its fitting accuracy and efficiency are then shown with a generalized model of stochastic datasets. The algorithm is compared to another recently published state finding algorithm and is found to be 27 times faster and more accurate over 55% of the generalized experimental space. NoRSE is written as an M-file for Matlab.

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