Metavir: a web server dedicated to virome analysis | Zendy

Simon Roux | Zendy; Michaël Faubladier | Zendy; Antoine Mahul | Zendy; Nils Paulhe | Zendy; Aurélien Bernard | Zendy; Didier Debroas | Zendy; François Enault | Zendy

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Metavir: a web server dedicated to virome analysis

Author(s) -

Simon Roux,

Michaël Faubladier,

Antoine Mahul,

Nils Paulhe,

Aurélien Bernard,

Didier Debroas,

François Enault

Publication year - 2011

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btr519

Subject(s) - human virome , sequence analysis , web server , biology , computational biology , metagenomics , sequence (biology) , computer science , gene , world wide web , genetics , the internet

Metavir is a web server dedicated to the analysis of viral metagenomes (viromes). In addition to classical approaches for analyzing metagenomes (general sequence characteristics, taxonomic composition), new tools developed specifically for viral sequence analysis make it possible to: (i) explore viral diversity through automatically constructed phylogenies for selected marker genes, (ii) estimate gene richness through rarefaction curves and (iii) perform cross-comparison against other viromes using sequence similarities. Metavir is thus unique as a platform that allows a comprehensive virome analysis.

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