The LabelHash Server and Tools for substructure-based functional annotation | Zendy

Mark Moll | Zendy; Drew Bryant | Zendy; Lydia E. Kavraki | Zendy

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The LabelHash Server and Tools for substructure-based functional annotation

Author(s) -

Mark Moll,

Drew Bryant,

Lydia E. Kavraki

Publication year - 2011

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btr343

Subject(s) - plug in , computer science , login , annotation , web server , set (abstract data type) , function (biology) , substructure , matching (statistics) , data mining , computational biology , information retrieval , database , world wide web , biology , artificial intelligence , programming language , operating system , genetics , the internet , mathematics , statistics , structural engineering , engineering

The LabelHash server and tools are designed for large-scale substructure comparison. The main use is to predict the function of unknown proteins. Given a set of (putative) functional residues, LabelHash finds all occurrences of matching substructures in the entire Protein Data Bank, along with a statistical significance estimate and known functional annotations for each match. The results can be downloaded for further analysis in any molecular viewer. For Chimera, there is a plugin to facilitate this process.

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