Model building and intelligent acquisition with application to protein subcellular location classification
Author(s) -
C. S. Jackson,
Estelle Glory-Afshar,
Robert F. Murphy,
Jelena Kovačević
Publication year - 2011
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btr286
Subject(s) - computer science , software , process (computing) , data acquisition , knowledge acquisition , artificial intelligence , machine learning , data mining , operating system
We present a framework and algorithms to intelligently acquire movies of protein subcellular location patterns by learning their models as they are being acquired, and simultaneously determining how many cells to acquire as well as how many frames to acquire per cell. This is motivated by the desire to minimize acquisition time and photobleaching, given the need to build such models for all proteins, in all cell types, under all conditions. Our key innovation is to build models during acquisition rather than as a post-processing step, thus allowing us to intelligently and automatically adapt the acquisition process given the model acquired.
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