A detailed investigation of accessibilities around target sites of siRNAs and miRNAs
Author(s) -
Hisanori Kiryu,
Goro Terai,
Osamu Imamura,
Hiroyuki Yoneyama,
Kenji Suzuki,
Kiyoshi Asai
Publication year - 2011
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btr276
Subject(s) - small interfering rna , rna , computational biology , microrna , base pair , trans acting sirna , transcription (linguistics) , gene silencing , biology , genetics , gene , linguistics , philosophy
The importance of RNA sequence analysis has been increasing since the discovery of various types of non-coding RNAs transcribed in animal cells. Conventional RNA sequence analyses have mainly focused on structured regions, which are stabilized by the stacking energies acting on adjacent base pairs. On the other hand, recent findings regarding the mechanisms of small interfering RNAs (siRNAs) and transcription regulation by microRNAs (miRNAs) indicate the importance of analyzing accessible regions where no base pairs exist. So far, relatively few studies have investigated the nature of such regions.
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