RuleBender: a visual interface for rule-based modeling | Zendy

Wen Xu | Zendy; Adam M. Smith | Zendy; James R. Faeder | Zendy; G. Elisabeta Marai | Zendy

AI Assistant Blog Pricing

Home ZAIA Blog

Open Access

RuleBender: a visual interface for rule-based modeling

Author(s) -

Wen Xu,

Adam M. Smith,

James R. Faeder,

G. Elisabeta Marai

Publication year - 2011

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btr197

Subject(s) - computer science , debugging , workflow , interface (matter) , visualization , programming language , user interface , os x , graphical user interface , line (geometry) , open source , data mining , software , human–computer interaction , operating system , information retrieval , database , geometry , mathematics , bubble , maximum bubble pressure method

Rule-based modeling (RBM) is a powerful and increasingly popular approach to modeling intracellular biochemistry. Current interfaces for RBM are predominantly text-based and command-line driven. Better visual tools are needed to make RBM accessible to a broad range of users, to make specification of models less error prone and to improve workflows. We present RULEBENDER, an open-source visual interface that facilitates interactive debugging, simulation and analysis of RBMs.

The content you want is available to Zendy users.

Already have an account? Click here to sign in.

Having issues? You can contact us here

Accelerating Research