CMView: Interactive contact map visualization and analysis | Zendy

Corinna Vehlow | Zendy; Henning Stehr | Zendy; Matthias Winkelmann | Zendy; José M. Duarte | Zendy; Lars Petzold | Zendy; Juliane Dinse | Zendy; Michael Lappé | Zendy

AI Assistant Blog Pricing

Home ZAIA Blog

Open Access

CMView: Interactive contact map visualization and analysis

Author(s) -

Corinna Vehlow,

Henning Stehr,

Matthias Winkelmann,

José M. Duarte,

Lars Petzold,

Juliane Dinse,

Michael Lappé

Publication year - 2011

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btr163

Subject(s) - visualization , computer science , mit license , interactive visualization , software , domain (mathematical analysis) , source code , software visualization , computer graphics (images) , data mining , programming language , software development , mathematical analysis , software construction , mathematics

Contact maps are a valuable visualization tool in structural biology. They are a convenient way to display proteins in two dimensions and to quickly identify structural features such as domain architecture, secondary structure and contact clusters. We developed a tool called CMView which integrates rich contact map analysis with 3D visualization using PyMol. Our tool provides functions for contact map calculation from structure, basic editing, visualization in contact map and 3D space and structural comparison with different built-in alignment methods. A unique feature is the interactive refinement of structural alignments based on user selected substructures.

The content you want is available to Zendy users.

Already have an account? Click here to sign in.

Having issues? You can contact us here

Accelerating Research