MRSD: a web server for Metabolic Route Search and Design | Zendy

Deguo Xia | Zendy; Haoran Zheng | Zendy; Zhiqiang Liu | Zendy; Guisheng Li | Zendy; Jinlong Li | Zendy; Jiong Hong | Zendy; Kai Zhao | Zendy

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MRSD: a web server for Metabolic Route Search and Design

Author(s) -

Deguo Xia,

Haoran Zheng,

Zhiqiang Liu,

Guisheng Li,

Jinlong Li,

Jiong Hong,

Kai Zhao

Publication year - 2011

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btr160

Subject(s) - computer science , kegg , web server , product (mathematics) , world wide web , the internet , biology , biochemistry , gene , mathematics , gene expression , geometry , transcriptome

We present a tool called MRSD (Metabolic Route Search and Design) to search and design routes based on the weighted compound transform diagraph. The search submodule returns routes between a source and product compound within seconds in the network of one or multiple organisms based on data from KEGG. The design submodule designs a route from an appointed compound in an interactive mode. The two complementary functions, Metabolic Route Search and Design, can be broadly used in biosynthesis, bio-pharmaceuticals and the other related fields.

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