BiC: a web server for calculating bimodality of coexpression between gene and protein networks
Author(s) -
George C. Linderman,
Vishal Patel,
Mark R. Chance,
Gürkan Bebek
Publication year - 2011
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btr086
Subject(s) - bimodality , web server , computer science , gene , web application , computational biology , biology , genetics , world wide web , the internet , physics , quantum mechanics , galaxy
Bimodal patterns of expression have recently been shown to be useful not only in prioritizing genes that distinguish phenotypes, but also in prioritizing network models that correlate with proteomic evidence. In particular, subgroups of strongly coexpressed gene pairs result in an increased variance of the correlation distribution. This variance, a measure of association between sets of genes (or proteins), can be summarized as the bimodality of coexpression (BiC). We developed an online tool to calculate the BiC for user-defined gene lists and associated mRNA expression data. BiC is a comprehensive application that provides researchers with the ability to analyze both publicly available and user-collected array data.
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