Proteomics to go: Proteomatic enables the user-friendly creation of versatile MS/MS data evaluation workflows | Zendy

Michael Specht | Zendy; Sebastian Kuhlgert | Zendy; Christian Fufezan | Zendy; Michael Hippler | Zendy

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Proteomics to go: Proteomatic enables the user-friendly creation of versatile MS/MS data evaluation workflows

Author(s) -

Michael Specht,

Sebastian Kuhlgert,

Christian Fufezan,

Michael Hippler

Publication year - 2011

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btr081

Subject(s) - python (programming language) , computer science , scripting language , workflow , operating system , source code , software , installation , open source , user friendly , database , programming language , software engineering , embedded system

We present Proteomatic, an operating system independent and user-friendly platform that enables the construction and execution of MS/MS data evaluation pipelines using free and commercial software. Required external programs such as for peptide identification are downloaded automatically in the case of free software. Due to a strict separation of functionality and presentation, and support for multiple scripting languages, new processing steps can be added easily.

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