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Efficient simulation under a population genetics model of carcinogenesis
Author(s) -
Tianqi Zhu,
Yucheng Hu,
Zhiming Ma,
DeXing Zhang,
Tiejun Li,
Ziheng Yang
Publication year - 2011
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btr025
Subject(s) - mutation rate , mutation , carcinogenesis , population , variable (mathematics) , population genetics , computer science , algorithm , biology , genetics , cancer , mathematics , gene , demography , sociology , mathematical analysis
Cancer is well known to be the end result of somatic mutations that disrupt normal cell division. The number of such mutations that have to be accumulated in a cell before cancer develops depends on the type of cancer. The waiting time T(m) until the appearance of m mutations in a cell is thus an important quantity in population genetics models of carcinogenesis. Such models are often difficult to analyze theoretically because of the complex interactions of mutation, drift and selection. They are also computationally expensive to simulate because of the large number of cells and the low mutation rate.

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