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Model quality assessment for membrane proteins
Author(s) -
Arjun Ray,
Erik Lindahl,
Björn Wallner
Publication year - 2010
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btq581
Subject(s) - computer science , context (archaeology) , quality (philosophy) , machine learning , transmembrane protein , artificial intelligence , selection (genetic algorithm) , function (biology) , membrane protein , data mining , biology , membrane , biochemistry , paleontology , philosophy , receptor , epistemology , evolutionary biology
Learning-based model quality assessment programs have been quite successful at discriminating between high- and low-quality protein structures. Here, we show that it is possible to improve this performance significantly by restricting the learning space to a specific context, in this case membrane proteins. Since these are among the most important structures from a pharmaceutical point-of-view, it is particularly interesting to resolve local model quality for regions corresponding, e.g. to binding sites.

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