Model quality assessment for membrane proteins
Author(s) -
Arjun Ray,
Erik Lindahl,
Björn Wallner
Publication year - 2010
Publication title -
bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btq581
Subject(s) - computer science , context (archaeology) , quality (philosophy) , machine learning , transmembrane protein , artificial intelligence , selection (genetic algorithm) , function (biology) , membrane protein , data mining , biology , membrane , biochemistry , paleontology , philosophy , receptor , epistemology , evolutionary biology
Learning-based model quality assessment programs have been quite successful at discriminating between high- and low-quality protein structures. Here, we show that it is possible to improve this performance significantly by restricting the learning space to a specific context, in this case membrane proteins. Since these are among the most important structures from a pharmaceutical point-of-view, it is particularly interesting to resolve local model quality for regions corresponding, e.g. to binding sites.
Accelerating Research
Robert Robinson Avenue,
Oxford Science Park, Oxford
OX4 4GP, United Kingdom
Address
John Eccles HouseRobert Robinson Avenue,
Oxford Science Park, Oxford
OX4 4GP, United Kingdom