SmashCommunity: a metagenomic annotation and analysis tool | Zendy

Manimozhiyan Arumugam | Zendy; Eoghan Harrington | Zendy; Konrad Foerstner | Zendy; Jeroen Raes | Zendy; Peer Bork | Zendy

AI Assistant Blog Pricing

Home ZAIA Blog

Open Access

SmashCommunity: a metagenomic annotation and analysis tool

Author(s) -

Manimozhiyan Arumugam,

Eoghan Harrington,

Konrad Foerstner,

Jeroen Raes,

Peer Bork

Publication year - 2010

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btq536

Subject(s) - metagenomics , annotation , documentation , software , pipeline (software) , source code , computer science , sanger sequencing , data mining , computational biology , biology , dna sequencing , programming language , artificial intelligence , gene , genetics

SmashCommunity is a stand-alone metagenomic annotation and analysis pipeline suitable for data from Sanger and 454 sequencing technologies. It supports state-of-the-art software for essential metagenomic tasks such as assembly and gene prediction. It provides tools to estimate the quantitative phylogenetic and functional compositions of metagenomes, to compare compositions of multiple metagenomes and to produce intuitive visual representations of such analyses.

The content you want is available to Zendy users.

Already have an account? Click here to sign in.

Having issues? You can contact us here

Accelerating Research