Evoker: a visualization tool for genotype intensity data | Zendy

James Morris | Zendy; Joshua C. Randall | Zendy; Julian Maller | Zendy; Jeffrey C. Barrett | Zendy

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Evoker: a visualization tool for genotype intensity data

Author(s) -

James Morris,

Joshua C. Randall,

Julian Maller,

Jeffrey C. Barrett

Publication year - 2010

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btq280

Subject(s) - genome wide association study , visualization , software , single nucleotide polymorphism , genotype , computer science , software tool , sanger sequencing , cluster (spacecraft) , computational biology , data mining , biology , genetics , operating system , dna sequencing , gene

Genome-wide association studies (GWAS), which produce huge volumes of data, are now being carried out by many groups around the world, creating a need for user-friendly tools for data quality control (QC) and analysis. One critical aspect of GWAS QC is evaluating genotype cluster plots to verify sensible genotype calling in putatively associated single nucleotide polymorphisms (SNPs). Evoker is a tool for visualizing genotype cluster plots, and provides a solution to the computational and storage problems related to working with such large datasets.

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