pegas: an R package for population genetics with an integrated–modular approach | Zendy

Emmanuel Paradis | Zendy

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pegas: an R package for population genetics with an integrated–modular approach

Author(s) -

Emmanuel Paradis

Publication year - 2010

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btp696

Subject(s) - modular design , r package , population , computer science , software , software package , web application , world wide web , programming language , demography , sociology

pegas (Population and Evolutionary Genetics Analysis System) is a new package for the analysis of population genetic data. It is written in R and is integrated with two other existing R packages (ape and adegenet). pegas provides functions for standard population genetic methods, as well as low-level functions for developing new methods. The flexible and efficient graphical capabilities of R are used for plotting haplotype networks as well as for other functionalities. pegas emphasizes the need to further develop an integrated-modular approach for software dedicated to the analysis of population genetic data.

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