sORF finder: a program package to identify small open reading frames with high coding potential | Zendy

Kousuke Hanada | Zendy; Kenji Akiyama | Zendy; Tetsuya Sakurai | Zendy; Tetsuro Toyoda | Zendy; Kazuo Shinozaki | Zendy; ShinHan Shiu | Zendy

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sORF finder: a program package to identify small open reading frames with high coding potential

Author(s) -

Kousuke Hanada,

Kenji Akiyama,

Tetsuya Sakurai,

Tetsuro Toyoda,

Kazuo Shinozaki,

ShinHan Shiu

Publication year - 2009

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btp688

Subject(s) - coding (social sciences) , open reading frame , source code , computer science , open source , r package , biology , computational biology , coding region , software , programming language , genetics , peptide sequence , gene , statistics , mathematics

sORF finder is a program package for identifying small open reading frames (sORFs) with high-coding potential. This application allows the identification of coding sORFs according to the nucleotide composition bias among coding sequences and the potential functional constraint at the amino acid level through evaluation of synonymous and non-synonymous substitution rates.

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