Validation of double digest selective label database for sequenced prokaryotic genomes | Zendy

V. P. Terletskiy | Zendy; В. И. Тыщенко | Zendy; Ilargi Martínez-Ballesteros | Zendy; Javier Garaizar | Zendy; Joseba Bikandi | Zendy

AI Assistant Blog Pricing

Home ZAIA Blog

Open Access

Validation of double digest selective label database for sequenced prokaryotic genomes

Author(s) -

V. P. Terletskiy,

В. И. Тыщенко,

Ilargi Martínez-Ballesteros,

Javier Garaizar,

Joseba Bikandi

Publication year - 2009

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btp675

Subject(s) - strain (injury) , in silico , salmonella enterica , genome , typing , computational biology , computer science , database , biology , salmonella , genetics , bacteria , gene , anatomy

A database for simulation of double digest selective label (DDSL) typing technique has been created and validated against a sequenced strain (Salmonella enterica serovar Typhimurium strain LT2). In silico bands were in agreement with experimental, and the technique was able to discriminate among strains belonging to the same species. When compared with other strain discrimination techniques, DDSL showed a higher discriminatory power. The database contains precomputed data which may be searched to retrieve experimental conditions for typing all up-to-dated sequenced prokaryotic microorganisms.

The content you want is available to Zendy users.

Already have an account? Click here to sign in.

Having issues? You can contact us here

Accelerating Research