hPDI: a database of experimental human protein–DNA interactions | Zendy

Zhi Xie | Zendy; Shaohui Hu | Zendy; Seth Blackshaw | Zendy; Heng Zhu | Zendy; Jiang Qian | Zendy

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hPDI: a database of experimental human protein–DNA interactions

Author(s) -

Zhi Xie,

Shaohui Hu,

Seth Blackshaw,

Heng Zhu,

Jiang Qian

Publication year - 2009

Publication title -

bioinformatics

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 3.599

H-Index - 390

eISSN - 1367-4811

pISSN - 1367-4803

DOI - 10.1093/bioinformatics/btp631

Subject(s) - interactome , computer science , dna , computational biology , database , transcription (linguistics) , dna binding site , biology , promoter , genetics , gene , gene expression , linguistics , philosophy

The human protein DNA Interactome (hPDI) database holds experimental protein-DNA interaction data for humans identified by protein microarray assays. The unique characteristics of hPDI are that it contains consensus DNA-binding sequences not only for nearly 500 human transcription factors but also for >500 unconventional DNA-binding proteins, which are completely uncharacterized previously. Users can browse, search and download a subset or the entire data via a web interface. This database is freely accessible for any academic purposes.

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